Hi,
This functionality is not given directly for the reference levels set to percentage mode (although it is available for absolute levels), but there are two options:
1) If you are using the scope manually, you can turn on markers for the rise time measurement and you can then measure the values from the graticule
2) If controlling the instrument remotely, you can calculate the values by getting the high and low values from the scope and then calculating the reference values yourself from the known percentages.
" PERCent specifies that the reference levels are calculated as a percent relative to HIGH and LOW. The percentages are defined using the MEASUrement:REFLevel:PERCent commands "